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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 40268000-40268001 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM521900 IMR90 Fibroblast Lung H3K4me2 [Search on ENCODE]
GSM759665 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM503905 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM621425 None Adipocyte Adipose H3K4me1 [Search on ENCODE]
GSM1120348 None None Spleen H3K36me3 [Search on ENCODE]
GSM916064 None None Skeletal Muscle H3K27ac [Search on ENCODE]
GSM1112797 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM1112808 None Epithelium Liver H3K27ac [Search on ENCODE]
GSM1112809 None Epithelium Liver H3K27ac [Search on ENCODE]
GSM1314145 DND-41 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1252276 None None Stomach H3K36me3 [Search on ENCODE]
GSM1679101 LNCaP-abl Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM1679102 LNCaP-abl Epithelium Prostate H3K4me2 [Search on ENCODE]
ENCSR520BIM_1 None None Pancreas H3K27ac [Search on ENCODE]
ENCSR564IGJ_1 SK-N-SH Neuroblastoma cell Brain H3K27ac [Search on ENCODE]
ENCSR564IGJ_2 SK-N-SH Neuroblastoma cell Brain H3K27ac [Search on ENCODE]
ENCSR801IPH_1 None None gastrocnemius medialis H3K27ac [Search on ENCODE]
GSM818034 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM1975151 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1969596 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2357605 None Ewing sacroma None H3K27ac [Search on ENCODE]
GSM772846 None iPSC None H3K36me3 [Search on ENCODE]
GSM1907213 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1868869 C4-2B Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM2058766 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM2058760 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM773027 None iPSC None H3K36me3 [Search on ENCODE]
GSM2476344 501-Mel melanoma None H3K4me1 [Search on ENCODE]
GSM2644050 D1 ORL UVA Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644053 None Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644056 None Hepatocyte None H3K27ac [Search on ENCODE]
GSM2550191 None Progenitor Cells None H3K27ac [Search on ENCODE]
GSM2301919 RPM-MC Epithelium None H3K4me3 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.