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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 153881521-153881522 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1003530 NHLF Fibroblast Lung H2AZ [Search on ENCODE]
GSM1381222 None Neural Stem Cell None CHD8 [Search on ENCODE]
GSM1517753 501-Mel Melanoma Cell None SMARCA4 [Search on ENCODE]
ENCSR098YLE_2 HEK293 Epithelium Embryonic Kidney PRDM1 [Search on ENCODE]
ENCSR106EBH_1 HEK293 Epithelium Embryonic Kidney ZNF366 [Search on ENCODE]
ENCSR106EBH_2 HEK293 Epithelium Embryonic Kidney ZNF366 [Search on ENCODE]
ENCSR862QUL_1 HEK293 Epithelium Embryonic Kidney ZNF382 [Search on ENCODE]
GSM2026876 HEK293 Epithelium Embryonic Kidney ZFP64 [Search on ENCODE]
GSM1586664 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1970524 None Cortex Kidney EP300 [Search on ENCODE]
GSM2466630 293T None None ZNF680 [Search on ENCODE]
GSM2466629 293T None None ZNF680 [Search on ENCODE]
GSM1423007 None Melanocytic cell None PMEL [Search on ENCODE]
GSM2436682 A673 Polygonal Muscle MKL2 [Search on ENCODE]
GSM2550245 None Endothelial Cell None POLR2A [Search on ENCODE]
GSM2550203 None Endothelial Cell None POLR2A [Search on ENCODE]
GSM2090919 MOLT-4 T Lymphoblast None BRD4 [Search on ENCODE]
GSM2550196 None Progenitor Cells None POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.