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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 153881521-153881522 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701505 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM665829 None Epithelium Kidney DNase [Search on ENCODE]
GSM665824 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM665819 None None Fetal Brain DNase [Search on ENCODE]
GSM665806 None Epithelium Lung DNase [Search on ENCODE]
GSM595916 None Epithelium Lung DNase [Search on ENCODE]
GSM817210 None Cortex Fetal Kidney Right DNase [Search on ENCODE]
GSM1059531 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1059534 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM1059536 None None Fetal Spinal Cord DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM817190 None Cortex Fetal Kidney Left DNase [Search on ENCODE]
GSM817180 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM817183 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817184 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM817186 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM817174 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014528 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM723023 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM774224 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM849028 None Fibroblast Lung DNase [Search on ENCODE]
GSM1662261 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1662255 None Epithelium Corneal Epithelium ATAC-seq [Search on ENCODE]
ENCSR782XFY_1 None None Eye DNase [Search on ENCODE]
ENCSR782XFY_2 None None Eye DNase [Search on ENCODE]
ENCSR759UNY_1 None None Tongue DNase [Search on ENCODE]
ENCSR475VQD_1 None None Brain DNase [Search on ENCODE]
ENCSR512CWR None None Umbilical Cord DNase [Search on ENCODE]
ENCSR771DAX_2 None None Globus Pallidus DNase [Search on ENCODE]
ENCSR559WMK None None Tongue DNase [Search on ENCODE]
ENCSR620WAR_2 SJSA-1 Fibroblast Bone DNase [Search on ENCODE]
ENCSR705CNJ_2 None None Heart DNase [Search on ENCODE]
ENCSR813CKU None None Urinary Bladder DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR910OQF_1 None None Spinal Cord DNase [Search on ENCODE]
ENCSR224IYD_1 None None Medulla Oblongata DNase [Search on ENCODE]
ENCSR224IYD_2 None None Medulla Oblongata DNase [Search on ENCODE]
ENCSR946MVP_2 SK-N-DZ Neuroblast Brain DNase [Search on ENCODE]
ENCSR627NIF_2 None None Lung DNase [Search on ENCODE]
ENCSR706IDL_1 None None Midbrain DNase [Search on ENCODE]
ENCSR705CNJ_1 None None Heart DNase [Search on ENCODE]
ENCSR910OQF_2 None None Spinal Cord DNase [Search on ENCODE]
ENCSR000FJL_2 SK-N-DZ Neuroblast Brain DNase [Search on ENCODE]
ENCSR314EZY_2 None iPSC None DNase [Search on ENCODE]
ENCSR474GZQ_3 None None Retina DNase [Search on ENCODE]
ENCSR474GZQ_4 None None Retina DNase [Search on ENCODE]
ENCSR621ENC_1 None None Retina DNase [Search on ENCODE]
ENCSR664PKM_1 None None Heart DNase [Search on ENCODE]
ENCSR664PKM_2 None None Heart DNase [Search on ENCODE]
ENCSR768OLL_1 None None Kidney DNase [Search on ENCODE]
ENCSR804RSI_1 None None Heart DNase [Search on ENCODE]
ENCSR820WLP_1 None Stem cell None DNase [Search on ENCODE]
GSM2174882 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2098981 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2241148 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM1876025 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876027 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876028 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2476338 None Melanocyte Foreskin ATAC-seq [Search on ENCODE]
GSM2579552 None Cortex None ATAC-seq [Search on ENCODE]
GSM2898847 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2898851 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.