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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 31911254-31911255 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM665840 None Monocyte Blood DNase [Search on ENCODE]
GSM665826 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665825 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM646568 GM06990 B Lymphocyte Blood DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM646569 None Th1 None DNase [Search on ENCODE]
GSM646559 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM1102736 None Monocyte Blood DNase [Search on ENCODE]
GSM1014523 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014517 A549 Epithelium Lung DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014522 None Th2 None DNase [Search on ENCODE]
GSM1014536 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1014513 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM1014540 None Th1 None DNase [Search on ENCODE]
GSM774228 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849025 None Epithelium Lung DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM1102739 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM736496 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736620 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736510 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736564 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736637 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM736639 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM736626 HL-60 Promyeloblast Blood DNase [Search on ENCODE]
GSM736595 HL-60 Promyeloblast Blood DNase [Search on ENCODE]
GSM736634 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736552 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736565 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736581 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM736588 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024784 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024791 None Monocyte Blood DNase [Search on ENCODE]
GSM736520 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736608 SAEC Epithelium Lung DNase [Search on ENCODE]
GSM1024762 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1024760 None Th1 Blood DNase [Search on ENCODE]
GSM736592 None Th1 Blood DNase [Search on ENCODE]
GSM1024749 None Th1 Blood DNase [Search on ENCODE]
GSM1024740 None Th2 Blood DNase [Search on ENCODE]
GSM1024739 None Th2 Blood DNase [Search on ENCODE]
GSM1406342 None Macrophage Blood DNase [Search on ENCODE]
GSM1406347 None Macrophage Blood DNase [Search on ENCODE]
GSM1406357 None Macrophage Blood DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM1443801 hMADS-3 Adipocyte Adipose DNase [Search on ENCODE]
GSM1443802 hMADS-3 Adipocyte Adipose DNase [Search on ENCODE]
GSM1566739 None Adipocyte None DNase [Search on ENCODE]
GSM1581831 None Myeloid Cell None DNase [Search on ENCODE]
GSM1832754 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR148VUP_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR346JWH_1 A673 Polygonal Muscle DNase [Search on ENCODE]
ENCSR405TXU_1 None Adipocyte None DNase [Search on ENCODE]
ENCSR373BIX_2 None Dendritic Cell None DNase [Search on ENCODE]
ENCSR626RVD_1 None Neuron None DNase [Search on ENCODE]
GSM2083780 None Macrophage None ATAC-seq [Search on ENCODE]
GSM1858672 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM2676282 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676283 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2430671 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM822390 MCF-7 Epithelium Breast DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.