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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 67833836-67833837 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530666 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM665798 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530664 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530660 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530658 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM493384 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM817217 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM878645 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878644 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878636 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878623 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878624 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878648 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878639 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878633 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM878640 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878641 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878654 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM878643 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM878634 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1027349 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM817169 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM817170 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014512 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014534 HGF Fibroblast Gingiva DNase [Search on ENCODE]
GSM723022 None Haematopoietic Progenitor Cell Cord blood DNase [Search on ENCODE]
GSM774224 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM774223 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774235 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM774240 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM849030 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220606 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1220607 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM1220608 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1220610 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1255271 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255283 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338309 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736590 AG04449 Fibroblast Skin DNase [Search on ENCODE]
GSM736551 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM736616 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM1024770 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM736540 None Fibroblast Heart DNase [Search on ENCODE]
GSM736516 None Myocyte Heart DNase [Search on ENCODE]
GSM736547 None Fibroblast Eye DNase [Search on ENCODE]
GSM736576 HGF Fibroblast Gingiva DNase [Search on ENCODE]
GSM736579 HGF Fibroblast Gingiva DNase [Search on ENCODE]
GSM736541 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736628 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736523 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736609 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736511 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736555 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736614 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736528 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736632 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736560 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736553 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024788 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024772 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024771 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024787 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024786 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM736544 None Astrocyte Brain DNase [Search on ENCODE]
GSM736520 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736567 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736498 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM736546 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1024779 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1024793 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM736497 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736593 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1513903 None Stromal Cell None DNase [Search on ENCODE]
ENCSR083STA_1 MG-63 Fibroblast Bone DNase [Search on ENCODE]
ENCSR083STA_2 MG-63 Fibroblast Bone DNase [Search on ENCODE]
ENCSR346IHH_1 Daoy Polygonal Cerebellum DNase [Search on ENCODE]
ENCSR512CWR None None Umbilical Cord DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR620WAR_2 SJSA-1 Fibroblast Bone DNase [Search on ENCODE]
ENCSR217TAW_1 None Fibroblast None DNase [Search on ENCODE]
ENCSR217TAW_2 None Fibroblast None DNase [Search on ENCODE]
ENCSR809CEA_1 H4 Neuroglioma cell Brain DNase [Search on ENCODE]
ENCSR228IKB_2 None None Pancreas DNase [Search on ENCODE]
ENCSR691MQJ_1 EL None None DNase [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2241149 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2575301 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM1946441 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM1946440 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2224592 RKO Epithelium Colon DNase [Search on ENCODE]
GSM2224591 HUTU80 None None DNase [Search on ENCODE]
GSM1946434 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM1541008 RWPE1 Epithelium Prostate DNase [Search on ENCODE]
GSM2411162 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2411163 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2476338 None Melanocyte Foreskin ATAC-seq [Search on ENCODE]
GSM2714244 MCF-7 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM2411159 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2898804 None Stem cell None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.