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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 15579411-15579412 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM896987 BJ Fibroblast Skin KLF4 [Search on ENCODE]
GSM1033764 None Plasma Cell None POLR2A [Search on ENCODE]
GSM1033756 None Plasma Cell None CDK9 [Search on ENCODE]
GSM1070124 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1086294 Raji B Lymphocyte Blood PAX5 [Search on ENCODE]
GSM785499 None Macrophage None H2AZ [Search on ENCODE]
GSM823380 None T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM945604 None Monocyte Blood IRF5 [Search on ENCODE]
GSM1022943 None T Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1022949 None T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1022946 None T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1022950 None T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1022945 None T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1038275 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1038273 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1195560 None B Lymphocyte Blood IRF4 [Search on ENCODE]
GSM1195564 None Plasma Cell None POLR2A [Search on ENCODE]
GSM1164252 GM19239 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM1233976 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM733767 GM12878 B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM733746 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM935527 GM10847 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM935287 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935640 GM12892 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935291 GM15510 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935522 GM18505 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935530 GM18951 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935323 GM19099 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935461 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM803386 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM803355 GM12878 B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM803400 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM803399 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM803490 GM12892 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM1193662 Jurkat T Lymphocyte Blood GABPA [Search on ENCODE]
GSM1333964 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM486276 GM18505 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM486458 GM18505 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486462 GM19099 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486468 GM15510 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486473 GM12892 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486503 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486505 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486506 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM1690058 OCI-Ly10 B Lymphocyte Bone Marrow FOXP1 [Search on ENCODE]
GSM1668937 None B Lymphocyte Tonsil BCL6 [Search on ENCODE]
GSM1859073 None Th2 None MAF [Search on ENCODE]
ENCSR189YYK_2 GM12878 B Lymphocyte Blood ZBTB40 [Search on ENCODE]
ENCSR803JLV_1 HEK293 Epithelium Embryonic Kidney IKZF2 [Search on ENCODE]
ENCSR803JLV_2 HEK293 Epithelium Embryonic Kidney IKZF2 [Search on ENCODE]
ENCSR919CZU_1 HEK293 Epithelium Embryonic Kidney EGR2 [Search on ENCODE]
ENCSR919CZU_2 HEK293 Epithelium Embryonic Kidney EGR2 [Search on ENCODE]
GSM1970524 None Cortex Kidney EP300 [Search on ENCODE]
GSM1961565 None Th1 None BRD4 [Search on ENCODE]
GSM1527710 None Th1 None CDK9 [Search on ENCODE]
GSM1527707 None Th2 None POLR2A [Search on ENCODE]
GSM1527697 None Th2 None POLR2A [Search on ENCODE]
GSM1527695 None Th1 None POLR2A [Search on ENCODE]
GSM2176976 None Th1 None T [Search on ENCODE]
GSM2176974 None Th1 None T [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2386721 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2628093 GM12878 Lymphoblastoid None REL [Search on ENCODE]
GSM2474865 HCT-116 None HCT116 MCM2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.