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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 15579411-15579412 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701513 None T Lymphocyte Fetal Thymus DNase [Search on ENCODE]
GSM701509 None Lymphocyte Spleen DNase [Search on ENCODE]
GSM701497 None T Lymphocyte Fetal Thymus DNase [Search on ENCODE]
GSM701491 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM701489 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM665823 None T Lymphocyte Fetal Thymus DNase [Search on ENCODE]
GSM665820 None Natural Killer Cell Blood DNase [Search on ENCODE]
GSM1036259 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1036373 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1036372 None Natural Killer Cell Blood DNase [Search on ENCODE]
GSM1059530 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM778676 GM18519 Lymphoblastoid None DNase [Search on ENCODE]
GSM646569 None Th1 None DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM878656 None None Fetal Thymus DNase [Search on ENCODE]
GSM878657 None None Fetal Thymus DNase [Search on ENCODE]
GSM816657 GM12892 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816665 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM816659 GM19239 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816656 GM12891 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM1027351 None None Fetal Thymus DNase [Search on ENCODE]
GSM1027313 None None Fetal Thymus DNase [Search on ENCODE]
GSM817172 None None Fetal Thymus DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014523 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014541 None Th17 None DNase [Search on ENCODE]
GSM1014537 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014525 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014522 None Th2 None DNase [Search on ENCODE]
GSM1014521 None Th2 None DNase [Search on ENCODE]
GSM1014540 None Th1 None DNase [Search on ENCODE]
GSM1058790 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM774230 None None Fetal Thymus DNase [Search on ENCODE]
GSM1024765 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1024766 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1024789 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1024782 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM736620 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1024771 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024760 None Th1 Blood DNase [Search on ENCODE]
GSM736592 None Th1 Blood DNase [Search on ENCODE]
GSM1024790 None Th17 Blood DNase [Search on ENCODE]
GSM1024749 None Th1 Blood DNase [Search on ENCODE]
GSM1024752 None Th1 Blood DNase [Search on ENCODE]
GSM1024753 None Th1 Blood DNase [Search on ENCODE]
GSM1024792 None Th2 Blood DNase [Search on ENCODE]
GSM736502 None Th2 Blood DNase [Search on ENCODE]
GSM1024740 None Th2 Blood DNase [Search on ENCODE]
GSM1024739 None Th2 Blood DNase [Search on ENCODE]
GSM1024744 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1024741 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1484788 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM1484824 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM1484825 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2113548 MM1.S B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832756 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832757 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832758 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832759 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR318PRQ_2 None None Middle Frontal Gyrus DNase [Search on ENCODE]
ENCSR489NAM_1 OCI-Ly7 B cell lymphoma Blood DNase [Search on ENCODE]
ENCSR158VAT_1 None None Thyroid DNase [Search on ENCODE]
ENCSR158VAT_2 None None Thyroid DNase [Search on ENCODE]
ENCSR859CZM_1 None None occipital lobe DNase [Search on ENCODE]
GSM2306502 None Treg cell None ATAC-seq [Search on ENCODE]
GSM2306498 None Th2 None ATAC-seq [Search on ENCODE]
GSM2306496 None Th2 None ATAC-seq [Search on ENCODE]
GSM2306493 None Th1 None ATAC-seq [Search on ENCODE]
GSM2306489 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285675 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285671 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285662 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285650 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285636 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285631 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285612 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285593 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285592 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285590 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285572 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2365854 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365853 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365851 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365849 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365848 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365847 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365846 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM489282 GM12892 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM489288 GM19239 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM2705088 None Treg cell None ATAC-seq [Search on ENCODE]
GSM2411159 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2411158 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2710941 T.T T Lymphocyte Blood ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.