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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 117535027-117535028 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM669891 HUES6 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM817234 None Fibroblast Foreskin H3K4me1 [Search on ENCODE]
GSM534467 None Stromal Cell Adipose H3K4me1 [Search on ENCODE]
GSM669911 None Mesenchymal Stem Cell Bone Marrow H3K4me1 [Search on ENCODE]
GSM621679 None None Skeletal Muscle H3K4me1 [Search on ENCODE]
GSM621418 None Adipocyte Adipose H3K4me1 [Search on ENCODE]
GSM621402 None Mesenchymal Stem Cell Bone Marrow H3K4me1 [Search on ENCODE]
GSM1233924 GM12890 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1233945 GM12891 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1233966 GM12892 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1233968 GM12892 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234088 GM19238 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234089 GM19238 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234090 GM19238 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234134 GM19240 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234153 GM2255 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234172 GM2588 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234190 GM2610 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234207 GM2630 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234231 MS1 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM733649 NHLF Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM733779 None Osteoblast Bone H3K4me2 [Search on ENCODE]
GSM733704 None Osteoblast Bone H3K4me1 [Search on ENCODE]
GSM1399262 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1435530 GM2555 Fibroblast None H3K4me1 [Search on ENCODE]
GSM1418961 IMR90 Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM1566553 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1566555 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1566556 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1550799 None Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550832 GM18870 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550843 GM18504 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550845 None Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550866 GM19171 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550885 GM19119 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550887 GM18502 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550897 GM18861 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550900 GM18916 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550912 GM18502 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550930 GM19225 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550943 GM18499 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550949 GM18498 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550962 GM18909 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550967 GM19147 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550974 GM19152 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550985 GM18522 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1550989 None Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550997 GM18501 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1551003 None Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1551012 GM19143 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1551013 GM19153 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1551019 GM19159 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1653251 HEK293 Epithelium Embryonic Kidney H3K4me3 [Search on ENCODE]
GSM1866091 None None Brain H3K4me1 [Search on ENCODE]
GSM1866095 None None Brain H3K4me1 [Search on ENCODE]
ENCSR124MTJ_2 None Fibroblast None H3K4me2 [Search on ENCODE]
ENCSR726ZZX_1 ACC112 None None H3K4me1 [Search on ENCODE]
ENCSR906NGD_2 None Fibroblast None H3K4me1 [Search on ENCODE]
GSM772748 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM2277176 None Progenitor Cells Cord blood H3K4me2 [Search on ENCODE]
GSM2360951 Huh7 None None H4K5ac [Search on ENCODE]
GSM1422953 None Melanocytic cell None H3K4me1 [Search on ENCODE]
GSM2550214 None Fibroblast None H3 [Search on ENCODE]
GSM2040749 GM17942 Lymphoblastoid None H3K27me3 [Search on ENCODE]
GSM2877986 MCF-7 Epithelium Breast H4K12ac [Search on ENCODE]
GSM2877987 MCF-7 Epithelium Breast H4K12ac [Search on ENCODE]
GSM773028 None iPSC None H3K4me1 [Search on ENCODE]
GSM2150365 H1299 Epithelium Lung H3K4me1 [Search on ENCODE]
GSM2040753 ID00016 Lymphoblastoid None H3K27me3 [Search on ENCODE]
GSM2476344 501-Mel melanoma None H3K4me1 [Search on ENCODE]
GSM2877989 MCF-7 Epithelium Breast H4K12ac [Search on ENCODE]
GSM2870619 None osteosarcoma None H3K4me1 [Search on ENCODE]
GSM2877995 MCF-7 Epithelium Breast H4K12ac [Search on ENCODE]
GSM2877994 MCF-7 Epithelium Breast H4K12ac [Search on ENCODE]
GSM2877991 MCF-7 Epithelium Breast H4K12ac [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.