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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 53837092-53837093 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM659796 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM798439 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM798428 T47D Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM1086295 Namalwa B Lymphocyte None PAX5 [Search on ENCODE]
GSM929090 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM999793 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM1055812 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1241754 T47D Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1241758 T47D Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1010782 K562 Erythroblast Bone Marrow NR2F2 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM803409 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM1010823 T47D Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM803522 T47D Epithelium Mammary Gland EP300 [Search on ENCODE]
GSM803514 T47D Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1010718 T47D Epithelium Mammary Gland JUND [Search on ENCODE]
GSM803539 T47D Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM803374 T47D Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM1164145 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1164146 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1164147 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1246715 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1246716 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1462475 T47D Epithelium Mammary Gland HIF1A [Search on ENCODE]
GSM1669014 T47D Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM1669023 T47D Epithelium Mammary Gland EP300 [Search on ENCODE]
GSM1669026 T47D Epithelium Mammary Gland EP300 [Search on ENCODE]
GSM1669027 T47D Epithelium Mammary Gland EP300 [Search on ENCODE]
GSM1669028 T47D Epithelium Mammary Gland EP300 [Search on ENCODE]
GSM1669035 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM1669036 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM1669037 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM1669038 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM1669039 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM1669040 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM1515738 SF268 None None YAP1 [Search on ENCODE]
GSM1515741 SF268 None None TEAD1 [Search on ENCODE]
GSM1515742 SF268 None None TEAD1 [Search on ENCODE]
GSM1542532 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1542533 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1614029 MDA-MB-231 Epithelium Breast YAP1 [Search on ENCODE]
GSM1614034 MDA-MB-231 Epithelium Breast TEAD4 [Search on ENCODE]
GSM1614036 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1614037 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1642769 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1667161 HuCCT1 None None TEAD1 [Search on ENCODE]
GSM1700786 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1892294 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
ENCSR360HRA_2 K562 Erythroblast Bone Marrow KDM1A [Search on ENCODE]
ENCSR632DCH_1 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
ENCSR632DCH_2 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
ENCSR715CCR_2 K562 Erythroblast Bone Marrow DPF2 [Search on ENCODE]
ENCSR757IIU_1 K562 Erythroblast Bone Marrow HMBOX1 [Search on ENCODE]
ENCSR908CMW_1 K562 Erythroblast Bone Marrow KDM1A [Search on ENCODE]
GSM2026774 HEK293 Epithelium Embryonic Kidney ZNF8 [Search on ENCODE]
GSM501692 Saos-2 Osteosarcoma cell Bone TP53 [Search on ENCODE]
GSM631473 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM1855965 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855964 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856034 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856033 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856032 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856031 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856029 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856013 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856012 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855971 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855970 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855969 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855968 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1858659 T47D Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1858658 T47D Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1858657 T47D Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1858656 T47D Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1858655 T47D Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1858654 T47D Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1858653 T47D Embryonic Stem Cell Breast ESR1 [Search on ENCODE]
GSM1858652 T47D Embryonic Stem Cell Breast ESR1 [Search on ENCODE]
GSM1858651 T47D Embryonic Stem Cell Breast ESR1 [Search on ENCODE]
GSM1858650 T47D Embryonic Stem Cell Breast ESR1 [Search on ENCODE]
GSM1858648 T47D Embryonic Stem Cell Breast NR3C1 [Search on ENCODE]
GSM2095825 BJAB GCB DLBCL cells None BIRA [Search on ENCODE]
GSM1976297 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1976291 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2386721 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2242434 T47D None Breast FOXA1 [Search on ENCODE]
GSM2242433 T47D None Breast FOXA1 [Search on ENCODE]
GSM2242429 T47D None Breast FOXA1 [Search on ENCODE]
GSM2242428 T47D None Breast FOXA1 [Search on ENCODE]
GSM2877307 JMSU-1 cancer cells None RXRA [Search on ENCODE]
GSM2667964 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2401447 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2644573 T47D Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM2644572 T47D Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM2644571 T47D Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM2644577 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.