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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 31985445-31985446 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM317592 None Proerythroblast Blood H2AZ [Search on ENCODE]
GSM1024800 MCF-7 Epithelium Breast ARNT [Search on ENCODE]
GSM894086 MM1.S B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM945570 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1033764 None Plasma Cell None POLR2A [Search on ENCODE]
GSM1033761 None Plasma Cell None MED1 [Search on ENCODE]
GSM1033753 None Plasma Cell None BRD4 [Search on ENCODE]
GSM1070129 MM1.S B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1070127 MM1.S B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM785499 None Macrophage None H2AZ [Search on ENCODE]
GSM1126511 None CD14 cell None H2AZ [Search on ENCODE]
GSM1038275 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1038278 MM1.S B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1038277 MM1.S B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1038273 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1121094 None B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1195563 None Plasma Cell None POLR2A [Search on ENCODE]
GSM1195562 None Plasma Cell None POLR2A [Search on ENCODE]
GSM1195564 None Plasma Cell None POLR2A [Search on ENCODE]
GSM1164247 GM18522 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM1164250 GM19204 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM1224784 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1224787 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1234160 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234214 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1296385 Jurkat T Lymphocyte Blood CDK7 [Search on ENCODE]
GSM1313923 MM1.S B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1150961 Jurkat E6-1 T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1150962 Jurkat E6-1 T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1150963 Jurkat E6-1 T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1150964 Jurkat E6-1 T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003465 DND-41 T Lymphocyte Blood H2AZ [Search on ENCODE]
GSM733767 GM12878 B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM1003530 NHLF Fibroblast Lung H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM935277 GM12878 B Lymphocyte Blood TBP [Search on ENCODE]
GSM935386 GM12878 B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM935287 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935522 GM18505 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM803485 GM12878 B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1010771 GM12878 B Lymphocyte Blood PML [Search on ENCODE]
GSM803490 GM12892 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM1010843 HL-60 Promyeloblast Blood SPI1 [Search on ENCODE]
GSM1277993 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1333972 GM12878 B Lymphocyte Blood CEBPA [Search on ENCODE]
GSM486498 GM12878 B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM486504 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486507 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM486513 AG18359 Lymphocyte None POLR2A [Search on ENCODE]
GSM1519152 Ramos B Lymphocyte None NIPBL [Search on ENCODE]
GSM1603217 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1850204 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1850205 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1850206 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1841308 RS4 B Lymphocyte None SPI1 [Search on ENCODE]
GSM1816090 None Hematopoietic stem and progenitor cell Bone Marrow SPI1 [Search on ENCODE]
GSM1681426 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681425 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681423 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2064704 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM2064702 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM2218765 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM2218755 Jurkat T Lymphocyte Blood BRD4 [Search on ENCODE]
GSM2152021 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1976307 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1976301 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1976297 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM2094192 Raji Lymphoblast None POLR2A [Search on ENCODE]
GSM2473253 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM2679938 None Monocyte Blood T [Search on ENCODE]
GSM2090926 MOLT-4 T Lymphoblast None CDK9 [Search on ENCODE]
GSM2367758 MOLT-4 Leukemia None SUPT5H [Search on ENCODE]
GSM2550245 None Endothelial Cell None POLR2A [Search on ENCODE]
GSM2367759 MOLT-4 Leukemia None SUPT5H [Search on ENCODE]
GSM2643547 LCL Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM2643545 LCL Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM2090919 MOLT-4 T Lymphoblast None BRD4 [Search on ENCODE]
GSM2367766 MOLT-4 Leukemia None POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.