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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 228501578-228501579 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM614632 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM820431 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM820438 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM770758 AB32 Epithelium Mammary Gland PR [Search on ENCODE]
GSM785499 None Macrophage None H2AZ [Search on ENCODE]
GSM585590 SKNO-1 Myeloblast Bone Marrow ERG [Search on ENCODE]
GSM585591 SKNO-1 Myeloblast Bone Marrow FLI1 [Search on ENCODE]
GSM971946 HEK293 Epithelium Embryonic Kidney BRD2 [Search on ENCODE]
GSM937968 HeLa Epithelium Cervix H2AZ [Search on ENCODE]
GSM938413 IMR90 Fibroblast Lung SNAPC1 [Search on ENCODE]
GSM1099030 MDA-MB-453 Epithelium Mammary Gland AR [Search on ENCODE]
GSM1082309 Kasumi-1 Myeloblast Blood TCF7L1 [Search on ENCODE]
GSM1252929 CUTLL1 T Lymphocyte Blood ETS1 [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003465 DND-41 T Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM733760 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM733786 K562 Erythroblast Bone Marrow H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM935619 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM935566 HepG2 Epithelium Liver BHLHE40 [Search on ENCODE]
GSM935597 K562 Erythroblast Bone Marrow E2F6 [Search on ENCODE]
GSM1006876 MCF-7 Epithelium Breast POLR2A [Search on ENCODE]
GSM1006866 MCF-7 Epithelium Breast MYC [Search on ENCODE]
GSM803390 GM12878 B Lymphocyte Blood IRF4 [Search on ENCODE]
GSM1010729 GM12878 B Lymphocyte Blood MTA3 [Search on ENCODE]
GSM1010865 HepG2 Epithelium Liver MAX [Search on ENCODE]
GSM1122667 SUM159PT Epithelium Mammary Gland CTCF [Search on ENCODE]
GSM1308240 PC-3 Epithelium Prostate AR [Search on ENCODE]
GSM1424582 293T-Rex None None SCML2 [Search on ENCODE]
GSM1527834 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1493026 HEK293 Epithelium Embryonic Kidney WDR5 [Search on ENCODE]
GSM1566730 None Adipocyte None MED1 [Search on ENCODE]
GSM1607526 U2OS None Bone NR3C1 [Search on ENCODE]
ENCSR189YYK_2 GM12878 B Lymphocyte Blood ZBTB40 [Search on ENCODE]
ENCSR293QAR_1 GM12878 B Lymphocyte Blood MTA2 [Search on ENCODE]
ENCSR552XSN_2 GM12878 B Lymphocyte Blood MLLT1 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM1586664 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM2112810 T47D None Breast PR [Search on ENCODE]
GSM2140684 None Hematopoietic stem and progenitor cell None STAG1 [Search on ENCODE]
GSM2297328 HCT-116 Colon cancer cell Colon RAD21 [Search on ENCODE]
GSM641426 U2OS None Bone ESR1 [Search on ENCODE]
GSM2026052 Kasumi-1 Acute myeloid leukemia None ERG [Search on ENCODE]
GSM2212239 SEM B Lymphocyte None MED1 [Search on ENCODE]
GSM2405925 MV4;11 Acute myeloid leukemia None POLR2A [Search on ENCODE]
GSM1643951 MCF-7 None Breast ESR1 [Search on ENCODE]
GSM2574751 HepG2 Epithelium Liver FOXO3 [Search on ENCODE]
GSM1423007 None Melanocytic cell None PMEL [Search on ENCODE]
GSM1897369 MV4-11 Leukemia Cell None KMT2A [Search on ENCODE]
GSM2474864 HCT-116 None HCT116 SIRT1 [Search on ENCODE]
GSM1981414 PrEC Epithelium Prostate H2AZ [Search on ENCODE]
GSM2498494 breast triple negative tumor cell line BCSC1 None Breast KDM4A [Search on ENCODE]
GSM2760313 SH-SY5Y Neuron None H2AZ [Search on ENCODE]
GSM2702725 HCT-116 None Colon H2AZ [Search on ENCODE]
GSM2702724 HCT-116 None Colon H2AZ [Search on ENCODE]
GSM865742 HEK293T Epithelium Embryonic Kidney GPS2 [Search on ENCODE]
GSM2521495 MOLT-4 T Lymphoblast None POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.