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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 228501578-228501579 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1036259 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1059530 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM646568 GM06990 B Lymphocyte Blood DNase [Search on ENCODE]
GSM646559 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM1102736 None Monocyte Blood DNase [Search on ENCODE]
GSM816656 GM12891 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014513 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM1058790 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM736637 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM2048320 None Type 3 innate lympoid cell Tonsil ATAC-seq [Search on ENCODE]
GSM2048321 None Th17 Tonsil ATAC-seq [Search on ENCODE]
ENCSR228IKB_2 None None Pancreas DNase [Search on ENCODE]
ENCSR229PFU_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM2224592 RKO Epithelium Colon DNase [Search on ENCODE]
GSM2224591 HUTU80 None None DNase [Search on ENCODE]
GSM2411165 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2411167 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2411163 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2411159 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM822388 LNCaP Epithelium Prostate DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.