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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 150875458-150875459 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM935551 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM1234119 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM935553 HeLa-S3 Epithelium Cervix CEBPB [Search on ENCODE]
GSM935519 IMR90 Fibroblast Lung CEBPB [Search on ENCODE]
GSM935457 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935399 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM1577746 None T Lymphocyte Blood STAT5B [Search on ENCODE]
GSM1577747 None T Lymphocyte Blood STAT5B [Search on ENCODE]
GSM1684634 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684635 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684636 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684642 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
ENCSR707BNG_1 HEK293 Epithelium Embryonic Kidney MYNN [Search on ENCODE]
GSM2104436 HeLa Epithelium Cervix MBD3 [Search on ENCODE]
GSM2188503 None Osteoblast None CEBPB [Search on ENCODE]
GSM2394399 JHU-06 Endothelial Cell None CEBPD [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.