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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 151680621-151680622 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1024800 MCF-7 Epithelium Breast ARNT [Search on ENCODE]
GSM986064 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM986063 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM798435 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM798432 TAM_R Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM798434 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM896987 BJ Fibroblast Skin KLF4 [Search on ENCODE]
GSM983104 NCI-H3122 None Lung NKX2-1 [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935588 MCF-10A Epithelium Breast POLR2A [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM1010748 A549 Epithelium Lung FOSL2 [Search on ENCODE]
GSM803538 GM12878 B Lymphocyte Blood BATF [Search on ENCODE]
GSM803474 HCT-116 None Colon POLR2A [Search on ENCODE]
GSM1010756 HCT-116 None Colon FOSL1 [Search on ENCODE]
GSM1010768 MCF-7 Epithelium Breast FOSL2 [Search on ENCODE]
GSM1246714 NCI-H441 Epithelium Lung SMAD3 [Search on ENCODE]
GSM1246715 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1246716 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1250896 AGS Epithelium Stomach GATA4 [Search on ENCODE]
GSM1545661 None None Colon POLR2A [Search on ENCODE]
GSM1545663 None None Colon POLR2A [Search on ENCODE]
GSM1678029 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1825746 None Fibroblast None T [Search on ENCODE]
GSM1670712 HuCCT1 None None POLR2A [Search on ENCODE]
GSM1670714 HuCCT1 None None POLR2A [Search on ENCODE]
GSM1958041 LCL Lymphoblastoid Blood RBPJ [Search on ENCODE]
ENCSR897MMC_1 GM12878 B Lymphocyte Blood JUNB [Search on ENCODE]
ENCSR897MMC_2 GM12878 B Lymphocyte Blood JUNB [Search on ENCODE]
GSM1856034 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856033 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856032 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856031 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856029 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1919987 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1919984 CFPAC-1 None Pancreatic ductal KLF5 [Search on ENCODE]
GSM1574274 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1825677 OVCA429 None None GRHL2 [Search on ENCODE]
GSM1917770 HCT-116 Colon cancer cell Colon ATF3 [Search on ENCODE]
GSM2042913 HT29 colorectal adenocarcinoma None JUND [Search on ENCODE]
GSM2042908 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042906 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042905 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042902 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042901 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042900 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042852 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2104436 HeLa Epithelium Cervix MBD3 [Search on ENCODE]
GSM2066439 HCC1954 None Breast POLR2A [Search on ENCODE]
GSM2171836 MCF-7 asynchonous cells Breast GRHL2 [Search on ENCODE]
GSM2171835 MCF-7 asynchonous cells Breast GRHL2 [Search on ENCODE]
GSM2171834 MCF-7 asynchonous cells Breast GRHL2 [Search on ENCODE]
GSM2330605 SUM229 Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2501567 MDA-MB-231 None Breast E2F1 [Search on ENCODE]
GSM2467224 MCF-7 None Mammary Gland ESR1 [Search on ENCODE]
GSM1423007 None Melanocytic cell None PMEL [Search on ENCODE]
GSM2359450 N87 None Stomach BRD4 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2571049 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2571061 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2571062 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2571063 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436679 A673 Polygonal Muscle SRF [Search on ENCODE]
GSM2702724 HCT-116 None Colon H2AZ [Search on ENCODE]
GSM2359460 RT112 Epithelium Urinary Bladder BRD4 [Search on ENCODE]
GSM2576176 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2409664 G-401 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2218633 TIME Fibroblast None POLR2A [Search on ENCODE]
GSM2571055 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2436685 A673 Polygonal Muscle MKL2 [Search on ENCODE]
GSM2571036 HCT-116 None HCT116 POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.