Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 84090844-84090845 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM417820 None T Lymphocyte Blood H2AZ [Search on ENCODE]
GSM798438 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM785493 None Monocyte None H2AZ [Search on ENCODE]
GSM1126512 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126511 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126513 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126514 None CD14 cell None H2AZ [Search on ENCODE]
GSM983105 NCI-H3122 None Lung FOXA1 [Search on ENCODE]
GSM1141538 DLD-1 Epithelium Colon REPIN1 [Search on ENCODE]
GSM1208763 LoVo None Colon JUND [Search on ENCODE]
GSM1057025 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1057027 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1234160 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM733767 GM12878 B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003548 None Monocyte Blood H2AZ [Search on ENCODE]
GSM1010758 HCT-116 None Colon CBX3 [Search on ENCODE]
GSM1010847 HCT-116 None Colon JUND [Search on ENCODE]
GSM1010837 MCF-7 Epithelium Breast NR2F2 [Search on ENCODE]
GSM1010768 MCF-7 Epithelium Breast FOSL2 [Search on ENCODE]
GSM1246713 NCI-H441 Epithelium Lung SMAD3 [Search on ENCODE]
GSM1246714 NCI-H441 Epithelium Lung SMAD3 [Search on ENCODE]
GSM1246715 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1246716 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1543791 LNCaP Epithelium Prostate TOP1 [Search on ENCODE]
GSM1503220 None None Coronary artery smooth muscle JUND [Search on ENCODE]
GSM1678029 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1678030 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM791414 LS180 Epithelium Colon CDX2 [Search on ENCODE]
GSM1576451 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1614036 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1614037 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1670708 HuCCT1 None None SMC1A [Search on ENCODE]
GSM1670709 HuCCT1 None None SMC1A [Search on ENCODE]
ENCSR098YLE_1 HEK293 Epithelium Embryonic Kidney PRDM1 [Search on ENCODE]
ENCSR098YLE_2 HEK293 Epithelium Embryonic Kidney PRDM1 [Search on ENCODE]
GSM1856034 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856033 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856032 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1919987 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1919985 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1574274 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM2042906 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042905 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042904 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042850 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2042848 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2042846 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2219868 LNCaP Epithelium Prostate PIAS1 [Search on ENCODE]
GSM2219867 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219866 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219864 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219861 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2224583 SNU175 Colorectal cancer cell line None TFAP4 [Search on ENCODE]
GSM2501568 MDA-MB-231 None Breast TP53 [Search on ENCODE]
GSM2501567 MDA-MB-231 None Breast E2F1 [Search on ENCODE]
GSM2501565 MDA-MB-231 None Breast FOSL1 [Search on ENCODE]
GSM2266291 Calu-3 None Lung JUN [Search on ENCODE]
GSM2977506 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401447 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2643541 LCL Lymphoblastoid Blood BRD4 [Search on ENCODE]
GSM2360622 MDA-231 Epithelium Mammary Gland ZEB1 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.