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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 151400606-151400607 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM301581 HEK293T Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM301568 HEK293T Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM2305255 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305253 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305252 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305251 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2442782 None Endothelial Cell Umbilical Vein POLR2A [Search on ENCODE]
GSM2442781 None Endothelial Cell Umbilical Vein POLR2A [Search on ENCODE]
GSM1556189 RKO Epithelium Colon BRPF3 [Search on ENCODE]
GSM2719738 HCT-116 None HCT116 ARID1A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.