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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 150604427-150604428 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM320734 HeLa-S3 Epithelium Cervix POLR2A [Search on ENCODE]
GSM601399 HeLa Epithelium Cervix SMARCA4 [Search on ENCODE]
GSM320736 HeLa-S3 Epithelium Cervix STAT1 [Search on ENCODE]
GSM894082 U87 None Brain MED1 [Search on ENCODE]
GSM897115 BG03 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM937544 BG03 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM991662 IMR90 Fibroblast Lung E2F7 [Search on ENCODE]
GSM1038284 U87 None Brain BRD4 [Search on ENCODE]
GSM1195551 U87 None Brain BRD4 [Search on ENCODE]
GSM1264165 HeLa Epithelium Cervix CHRM2 [Search on ENCODE]
GSM1003581 A549 Epithelium Lung CTCF [Search on ENCODE]
GSM1003546 A549 Epithelium Lung H2AZ [Search on ENCODE]
GSM1003580 A549 Epithelium Lung H2AZ [Search on ENCODE]
GSM733746 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM935395 HeLa-S3 Epithelium Cervix POLR2A [Search on ENCODE]
GSM935367 HeLa-S3 Epithelium Cervix TFAP2A [Search on ENCODE]
GSM935511 HeLa-S3 Epithelium Cervix SMARCA4 [Search on ENCODE]
GSM935360 HeLa-S3 Epithelium Cervix STAT1 [Search on ENCODE]
GSM935603 HepG2 Epithelium Liver POLR2A [Search on ENCODE]
GSM935513 IMR90 Fibroblast Lung POLR2A [Search on ENCODE]
GSM935587 U2OS None Bone TRIM28 [Search on ENCODE]
GSM803366 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM803474 HCT-116 None Colon POLR2A [Search on ENCODE]
GSM803533 HeLa-S3 Epithelium Cervix POLR2A [Search on ENCODE]
GSM803459 U87 None Brain POLR2A [Search on ENCODE]
GSM1091918 MCF-7 Epithelium Breast POLR2A [Search on ENCODE]
GSM602297 H9 Embryonic Stem Cell Embryo SMARCA4 [Search on ENCODE]
GSM1330728 MRC5 Fibroblast Lung POLR2A [Search on ENCODE]
GSM1684641 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684643 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1825746 None Fibroblast None T [Search on ENCODE]
GSM1831600 SMMC-7721 None Liver PBX3 [Search on ENCODE]
GSM1893926 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1893928 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1416807 LX2 Hepatic Stellate Cell None BRD3 [Search on ENCODE]
ENCSR149ZBI_1 K562 Erythroblast Bone Marrow ZNF584 [Search on ENCODE]
ENCSR194IJN_2 K562 Erythroblast Bone Marrow ZNF766 [Search on ENCODE]
ENCSR239ZLZ_2 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR400FSM_1 K562 Erythroblast Bone Marrow POLR2H [Search on ENCODE]
ENCSR632DCH_1 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
ENCSR657EOF_2 K562 Erythroblast Bone Marrow NFRKB [Search on ENCODE]
ENCSR750LYM_2 K562 Erythroblast Bone Marrow NR2C2 [Search on ENCODE]
ENCSR845BCL_2 K562 Erythroblast Bone Marrow ZNF639 [Search on ENCODE]
ENCSR854MCV_1 K562 Erythroblast Bone Marrow IRF1 [Search on ENCODE]
GSM1856033 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1919986 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM1919984 CFPAC-1 None Pancreatic ductal KLF5 [Search on ENCODE]
GSM1574273 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM2042906 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2257956 A549 Epithelium Lung H2AZ [Search on ENCODE]
GSM2066437 NCI-H2087 Epithelium Lung POLR2A [Search on ENCODE]
GSM2330599 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330597 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330595 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330590 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330589 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330587 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330579 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330549 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2360991 None 3565 cells None POLR2A [Search on ENCODE]
GSM2360990 None 3565 cells None JMJD6 [Search on ENCODE]
GSM2501567 MDA-MB-231 None Breast E2F1 [Search on ENCODE]
GSM2467218 MCF-7 None Mammary Gland H2AZ [Search on ENCODE]
GSM2467216 MCF-7 None Mammary Gland H2AZ [Search on ENCODE]
GSM2467215 MCF-7 None Mammary Gland H2AZ [Search on ENCODE]
GSM2467213 MCF-7 None Mammary Gland H2AZ [Search on ENCODE]
GSM1423007 None Melanocytic cell None PMEL [Search on ENCODE]
GSM2574773 K562 Erythroblast Bone Marrow ZNF410 [Search on ENCODE]
GSM2550217 None Fibroblast None POLR2A [Search on ENCODE]
GSM2359436 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2359435 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2550238 None Progenitor Cells None POLR2A [Search on ENCODE]
GSM2550230 None Stem cell None EP300 [Search on ENCODE]
GSM2359453 PC-9 Lung Cancer Cell Lung BRD4 [Search on ENCODE]
GSM2409695 None Embryonic Stem Cell epithelioid sarcoma SMARCC1 [Search on ENCODE]
GSM2409694 None Embryonic Stem Cell epithelioid sarcoma SMARCA4 [Search on ENCODE]
GSM2436682 A673 Polygonal Muscle MKL2 [Search on ENCODE]
GSM2436683 A673 Polygonal Muscle MKL2 [Search on ENCODE]
GSM2667962 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436679 A673 Polygonal Muscle SRF [Search on ENCODE]
GSM2436678 A673 Polygonal Muscle SRF [Search on ENCODE]
GSM2702724 HCT-116 None Colon H2AZ [Search on ENCODE]
GSM2550245 None Endothelial Cell None POLR2A [Search on ENCODE]
GSM2359444 H3122 None Lung BRD4 [Search on ENCODE]
GSM889412 LS174T Epithelium Colon POLR2A [Search on ENCODE]
GSM2436684 A673 Polygonal Muscle MKL2 [Search on ENCODE]
GSM2519954 None None Muscle POLR2A [Search on ENCODE]
GSM2913902 MDA-MB-231 mDA None POLR2A [Search on ENCODE]
GSM2550196 None Progenitor Cells None POLR2A [Search on ENCODE]
GSM2218631 TIME Fibroblast None POLR2A [Search on ENCODE]
GSM2218630 TIME Fibroblast None POLR2A [Search on ENCODE]
GSM2467777 MCF-10A Epithelium Breast POLR2A [Search on ENCODE]
GSM2550259 None Fibroblast None POLR2A [Search on ENCODE]
GSM2409700 None Embryonic Stem Cell epithelioid sarcoma SMARCB1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.