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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 8510541-8510542 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM896985 BJ Fibroblast Skin POU5F1 [Search on ENCODE]
GSM1126514 None CD14 cell None H2AZ [Search on ENCODE]
GSM929090 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM991660 IMR90 Fibroblast Lung E2F7 [Search on ENCODE]
GSM991661 IMR90 Fibroblast Lung E2F7 [Search on ENCODE]
GSM1113427 Kasumi-1 Myeloblast Blood RUNX1 [Search on ENCODE]
GSM1055812 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1233911 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233913 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233954 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233975 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233976 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234076 GM19193 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234143 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234160 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1295092 None Fibroblast Foreskin RNF2 [Search on ENCODE]
GSM1328844 LCL Lymphoblastoid Blood TERF1 [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM733767 GM12878 B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM733760 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM1003505 NHDF-Ad Fibroblast Skin H2AZ [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM1003530 NHLF Fibroblast Lung H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM935519 IMR90 Fibroblast Lung CEBPB [Search on ENCODE]
GSM935624 IMR90 Fibroblast Lung RAD21 [Search on ENCODE]
GSM1003614 IMR90 Fibroblast Lung MXI1 [Search on ENCODE]
GSM1003632 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1003626 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010881 GM12878 B Lymphocyte Blood NFIC [Search on ENCODE]
GSM1010897 SK-N-SH Neuroblastoma cell Brain YY1 [Search on ENCODE]
GSM1010880 SK-N-SH Neuroblastoma cell Brain NFIC [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010858 SK-N-SH Neuroblastoma cell Brain TEAD4 [Search on ENCODE]
GSM1010835 SK-N-SH Neuroblastoma cell Brain MAX [Search on ENCODE]
GSM1010750 SK-N-SH Neuroblastoma cell Brain FOXM1 [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010834 SK-N-SH Neuroblastoma cell Brain MEF2A [Search on ENCODE]
GSM1010817 SK-N-SH Neuroblastoma cell Brain POLR2A [Search on ENCODE]
GSM1010763 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010767 SK-N-SH Neuroblastoma cell Brain RXRA [Search on ENCODE]
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM803495 SK-N-SH_RA Neuron Brain EP300 [Search on ENCODE]
GSM1442789 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1442790 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1443813 hMADS-3 Adipocyte Adipose KLF11 [Search on ENCODE]
GSM1519151 Ramos B Lymphocyte None NIPBL [Search on ENCODE]
GSM1519152 Ramos B Lymphocyte None NIPBL [Search on ENCODE]
GSM1463462 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463463 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463464 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1647185 HEK293A None None MEF2B [Search on ENCODE]
GSM1696207 IMR90 Fibroblast Lung YAP1 [Search on ENCODE]
GSM1701807 None Thymocyte None RAG2 [Search on ENCODE]
GSM1934095 SEM Pre-B Lymphocyte None KMT2A [Search on ENCODE]
ENCSR146BGM_1 None None gastroesophageal sphincter CTCF [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
ENCSR957KYB_1 IMR90 Fibroblast Lung BHLHE40 [Search on ENCODE]
GSM1586665 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586664 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586661 C4-2 None Prostate AR [Search on ENCODE]
GSM2098180 IMR90 None None BRD4 [Search on ENCODE]
GSM1970524 None Cortex Kidney EP300 [Search on ENCODE]
GSM803509 GM12878 B Lymphocyte Blood BCLAF1 [Search on ENCODE]
GSM2364550 None None Spleen KMT2A [Search on ENCODE]
GSM2364542 SEM B Lymphocyte None KMT2A [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2386721 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2550216 None Fibroblast None EP300 [Search on ENCODE]
GSM2550217 None Fibroblast None POLR2A [Search on ENCODE]
GSM2519942 None None Muscle NR3C1 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519944 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2519948 None None Muscle NR3C1 [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2519953 None None Muscle POLR2A [Search on ENCODE]
GSM2519950 None None Muscle KLF15 [Search on ENCODE]
GSM2519951 None None Muscle KLF15 [Search on ENCODE]
GSM2519959 None None Muscle KLF15 [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2550258 None Fibroblast None EP300 [Search on ENCODE]
GSM2550259 None Fibroblast None POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.