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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 147072888-147072889 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1085735 MM1.S B Lymphocyte Blood CDK9 [Search on ENCODE]
GSM881711 NCCIT None Embryo SMARCB1 [Search on ENCODE]
GSM1070124 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1070125 MM1.S B Lymphocyte Blood CTCF [Search on ENCODE]
GSM785493 None Monocyte None H2AZ [Search on ENCODE]
GSM785499 None Macrophage None H2AZ [Search on ENCODE]
GSM1126511 None CD14 cell None H2AZ [Search on ENCODE]
GSM654639 NCCIT None Embryo POLR2A [Search on ENCODE]
GSM822294 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM823380 None T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM894108 MM1.S B Lymphocyte Blood MYC [Search on ENCODE]
GSM1022946 None T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1038275 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1038276 MM1.S B Lymphocyte Blood MED1 [Search on ENCODE]
GSM1038277 MM1.S B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1195560 None B Lymphocyte Blood IRF4 [Search on ENCODE]
GSM1195564 None Plasma Cell None POLR2A [Search on ENCODE]
GSM1138592 DU145 Epithelium Prostate RNF2 [Search on ENCODE]
GSM1138594 DU145 Epithelium Prostate BMI1 [Search on ENCODE]
GSM1180129 None iPSC None EZH2 [Search on ENCODE]
GSM1180131 None iPSC None JARID2 [Search on ENCODE]
GSM1180134 None iPSC None JARID2 [Search on ENCODE]
GSM1180135 None iPSC None EZH2 [Search on ENCODE]
GSM1180138 None iPSC None JARID2 [Search on ENCODE]
GSM1180150 None iPSC None EZH2 [Search on ENCODE]
GSM1180158 None iPSC None EZH2 [Search on ENCODE]
GSM1180161 None iPSC None JARID2 [Search on ENCODE]
GSM1180162 None iPSC None EZH2 [Search on ENCODE]
GSM1180165 None iPSC None JARID2 [Search on ENCODE]
GSM1233933 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233934 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234078 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003579 H1 Embryonic Stem Cell Embryo H2AZ [Search on ENCODE]
GSM1003479 H1 Embryonic Stem Cell Embryo KDM4A [Search on ENCODE]
GSM1003584 H1 Embryonic Stem Cell Embryo RBBP5 [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM733760 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM733746 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM1003548 None Monocyte Blood H2AZ [Search on ENCODE]
GSM1003499 None Astrocyte Brain H2AZ [Search on ENCODE]
GSM1003505 NHDF-Ad Fibroblast Skin H2AZ [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM1003530 NHLF Fibroblast Lung H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM935524 GM18526 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935325 GM19193 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935514 H1 Embryonic Stem Cell Embryo ZNF143 [Search on ENCODE]
GSM935379 H1 Embryonic Stem Cell Embryo RAD21 [Search on ENCODE]
GSM1006866 MCF-7 Epithelium Breast MYC [Search on ENCODE]
GSM803466 H1 Embryonic Stem Cell Embryo RAD21 [Search on ENCODE]
GSM803484 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM1010899 H1 Embryonic Stem Cell Embryo E2F6 [Search on ENCODE]
GSM1010898 H1 Embryonic Stem Cell Embryo MAX [Search on ENCODE]
GSM1010896 H1 Embryonic Stem Cell Embryo CREB1 [Search on ENCODE]
GSM803366 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM1010739 SK-N-SH Neuroblastoma cell Brain GABPA [Search on ENCODE]
GSM1010835 SK-N-SH Neuroblastoma cell Brain MAX [Search on ENCODE]
GSM1322266 MCF-7 Epithelium Breast MBD2 [Search on ENCODE]
GSM1348516 MCF-7 Epithelium Breast BRD4 [Search on ENCODE]
GSM1466841 H9 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM1289416 IMR90 Fibroblast Lung LMNB1 [Search on ENCODE]
GSM1427070 None Proerythroblast Fetal Liver EZH2 [Search on ENCODE]
GSM1288792 None Hematopoietic Stem Cell None TRIM28 [Search on ENCODE]
GSM1551468 CyT49 Embryonic Stem Cell Embryo FOXA2 [Search on ENCODE]
GSM1551469 CyT49 Embryonic Stem Cell Embryo FOXA2 [Search on ENCODE]
GSM1551470 CyT49 Embryonic Stem Cell Embryo FOXA2 [Search on ENCODE]
GSM1551471 CyT49 Embryonic Stem Cell Embryo FOXA2 [Search on ENCODE]
GSM1579346 None Embryonic Stem Cell None CTNNB1 [Search on ENCODE]
GSM1579355 None Embryonic Stem Cell None POLR2A [Search on ENCODE]
GSM1579358 None Embryonic Stem Cell None POLR2A [Search on ENCODE]
GSM1579359 None Embryonic Stem Cell None POLR2A [Search on ENCODE]
GSM1579361 None Embryonic Stem Cell None POLR2A [Search on ENCODE]
GSM1579362 None Embryonic Stem Cell None POLR2A [Search on ENCODE]
GSM1579363 None Embryonic Stem Cell None NIPBL [Search on ENCODE]
GSM1527033 CWR22Pc Epithelium Prostate AR [Search on ENCODE]
GSM1612069 None Stem cell Blood KDM2B [Search on ENCODE]
ENCSR369NGL_1 None iPSC None POLR2AphosphoS5 [Search on ENCODE]
ENCSR400FSM_1 K562 Erythroblast Bone Marrow POLR2H [Search on ENCODE]
ENCSR400FSM_2 K562 Erythroblast Bone Marrow POLR2H [Search on ENCODE]
GSM807391 H9 Embryonic Stem Cell Embryo H2AZ [Search on ENCODE]
GSM2026859 HEK293 Epithelium Embryonic Kidney ZNF382 [Search on ENCODE]
GSM2026857 HEK293 Epithelium Embryonic Kidney ZNF382 [Search on ENCODE]
GSM1937510 HEK293T Epithelium Embryonic Kidney TET2 [Search on ENCODE]
GSM2112810 T47D None Breast PR [Search on ENCODE]
GSM2112797 T47D None Breast PR [Search on ENCODE]
GSM2065886 HCT-116 Colon cancer cell Colon TCF7L1 [Search on ENCODE]
GSM2065876 HCT-116 Colon cancer cell Colon SP1 [Search on ENCODE]
GSM2067536 786-O Epithelium Kidney CTCF [Search on ENCODE]
GSM2309224 NCCIT Embryonal carcinoma cell None H2AZ [Search on ENCODE]
GSM1970164 None Fibroblast Fetal Lung SOX4 [Search on ENCODE]
GSM1970163 None Fibroblast Fetal Lung SOX4 [Search on ENCODE]
GSM2364548 SEM B Lymphocyte None AFF1 [Search on ENCODE]
GSM2364547 SEM B Lymphocyte None AFF1 [Search on ENCODE]
GSM2364544 SEM B Lymphocyte None KMT2A [Search on ENCODE]
GSM2466543 293T None None ZNF382 [Search on ENCODE]
GSM2466542 293T None None ZNF382 [Search on ENCODE]
GSM2544235 THP-1 Macrophage None POLR3D [Search on ENCODE]
GSM2544234 THP-1 Macrophage None POLR3D [Search on ENCODE]
GSM2543161 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543160 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543158 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543157 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543156 U2OS None None ZBTB48 [Search on ENCODE]
GSM2316299 None None Retina BRD4 [Search on ENCODE]
GSM2212253 THP-1 None None GLI2 [Search on ENCODE]
GSM2098768 None None Breast TRIM25 [Search on ENCODE]
GSM2398967 None Macrophage None SP140 [Search on ENCODE]
GSM2398965 None Macrophage None SP140 [Search on ENCODE]
GSM2687534 None Monocyte Blood RUNX1 [Search on ENCODE]
GSM2550210 None Stem cell None POLR2A [Search on ENCODE]
GSM2467007 Jurkat T Lymphocyte Blood TET2 [Search on ENCODE]
GSM2677682 None Chondrocyte Cartilage HCFC1R1 [Search on ENCODE]
GSM2805870 None hESC None RYBP [Search on ENCODE]
GSM1981414 PrEC Epithelium Prostate H2AZ [Search on ENCODE]
GSM2467011 None None Kidney RUNX1 [Search on ENCODE]
GSM2443453 LCL B Lymphocyte None NIPBL [Search on ENCODE]
GSM788367 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM2805869 None hESC None PCGF1 [Search on ENCODE]
GSM2274677 Jurkat T Lymphocyte Blood TET2 [Search on ENCODE]
GSM2274676 Jurkat T Lymphocyte Blood RUNX1 [Search on ENCODE]
GSM2333815 GM00739 Fibroblast None ATF3 [Search on ENCODE]
GSM1936755 IMR90 Fibroblast Lung HIRA [Search on ENCODE]
GSM2648932 None Embryonic Stem Cell None NANOG [Search on ENCODE]
GSM2805866 None hESC None BCOR [Search on ENCODE]
GSM2805867 None hESC None KDM2B [Search on ENCODE]
GSM2371322 None Hematopoietic Cell None EZH1 [Search on ENCODE]
GSM2805880 None hESC None KDM2B [Search on ENCODE]
GSM2805881 None hESC None KDM2B [Search on ENCODE]
GSM831035 H1 Embryonic Stem Cell Embryo KDM4A [Search on ENCODE]
GSM831038 H1 Embryonic Stem Cell Embryo RBBP5 [Search on ENCODE]
GSM831039 H1 Embryonic Stem Cell Embryo RBBP5 [Search on ENCODE]
GSM518374 H1 Embryonic Stem Cell Embryo NANOG [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.