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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 180501926-180501927 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM588930 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM588929 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM1024800 MCF-7 Epithelium Breast ARNT [Search on ENCODE]
GSM986065 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM986066 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM798436 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM798438 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM916524 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM945611 None Monocyte Blood STAT4 [Search on ENCODE]
GSM1008617 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM1208738 LoVo None Colon ETS2 [Search on ENCODE]
GSM1082309 Kasumi-1 Myeloblast Blood TCF7L1 [Search on ENCODE]
GSM1233887 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1233888 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1233934 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233956 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234079 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234100 GM19239 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234163 GM2588 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1239588 LoVo None Colon CTCF [Search on ENCODE]
GSM1274873 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1003444 H1 Embryonic Stem Cell Embryo CHD1 [Search on ENCODE]
GSM803411 GM12878 B Lymphocyte Blood ZEB1 [Search on ENCODE]
GSM1010809 HepG2 Epithelium Liver ZEB1 [Search on ENCODE]
GSM1091921 MCF-7 Epithelium Breast POLR2A [Search on ENCODE]
GSM1250896 AGS Epithelium Stomach GATA4 [Search on ENCODE]
GSM1068136 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1068137 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1410789 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354836 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354837 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354838 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354839 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463462 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1576451 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1820483 HEK293 Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM699635 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1934095 SEM Pre-B Lymphocyte None KMT2A [Search on ENCODE]
ENCSR004GKA_1 K562 Erythroblast Bone Marrow ZEB2 [Search on ENCODE]
ENCSR004GKA_2 K562 Erythroblast Bone Marrow ZEB2 [Search on ENCODE]
ENCSR322CFO_1 K562 Erythroblast Bone Marrow ZEB2 [Search on ENCODE]
ENCSR322CFO_2 K562 Erythroblast Bone Marrow ZEB2 [Search on ENCODE]
ENCSR328SUD_1 HEK293 Epithelium Embryonic Kidney ZNF335 [Search on ENCODE]
ENCSR402IDP_2 MM.1S B Lymphoblast Blood CTCF [Search on ENCODE]
ENCSR417VWF_1 HEK293 Epithelium Embryonic Kidney ZEB2 [Search on ENCODE]
ENCSR417VWF_2 HEK293 Epithelium Embryonic Kidney ZEB2 [Search on ENCODE]
ENCSR423RTK_1 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
ENCSR423RTK_2 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
ENCSR482BBZ_1 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
ENCSR631WAA_1 HEK293 Epithelium Embryonic Kidney ZBTB17 [Search on ENCODE]
ENCSR636EYA_1 MCF-7 Epithelium Breast CTBP1 [Search on ENCODE]
ENCSR636EYA_2 MCF-7 Epithelium Breast CTBP1 [Search on ENCODE]
ENCSR703TNG_1 MCF-7 Epithelium Breast RAD21 [Search on ENCODE]
ENCSR768HOH_2 HEK293 Epithelium Embryonic Kidney ZNF324 [Search on ENCODE]
ENCSR899BKM_1 MCF-7 Epithelium Breast ZNF687 [Search on ENCODE]
ENCSR899BKM_2 MCF-7 Epithelium Breast ZNF687 [Search on ENCODE]
ENCSR909HMT_1 HEK293 Epithelium Embryonic Kidney ZEB1 [Search on ENCODE]
ENCSR909HMT_2 HEK293 Epithelium Embryonic Kidney ZEB1 [Search on ENCODE]
GSM631469 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM631470 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM631471 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM631473 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM1574278 PANC-1 None Pancreatic ductal ZEB1 [Search on ENCODE]
GSM1873039 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1538430 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1691165 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1843413 C4-2 None Prostate POLR2A [Search on ENCODE]
GSM1858644 ZR-75-1 Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1970524 None Cortex Kidney EP300 [Search on ENCODE]
GSM1863005 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1863077 293T None None TET2 [Search on ENCODE]
GSM1863074 293T None None TET2 [Search on ENCODE]
GSM1891832 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2302869 MM1.S B Lymphocyte Blood HDAC1 [Search on ENCODE]
GSM2104436 HeLa Epithelium Cervix MBD3 [Search on ENCODE]
GSM2219867 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219866 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219865 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219864 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219863 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219861 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219860 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2171836 MCF-7 asynchonous cells Breast GRHL2 [Search on ENCODE]
GSM2171832 MCF-7 asynchonous cells Breast FOXA1 [Search on ENCODE]
GSM2242429 T47D None Breast FOXA1 [Search on ENCODE]
GSM2242428 T47D None Breast FOXA1 [Search on ENCODE]
GSM2579075 HEK293 Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM2579071 HEK293 Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM1556189 RKO Epithelium Colon BRPF3 [Search on ENCODE]
GSM2741773 HCT-116 None Colon ZFX [Search on ENCODE]
GSM2277160 22RV1 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2797078 None None Breast FOXA1 [Search on ENCODE]
GSM2644578 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM2735973 MCF-7 human brest cancer cell line None DNMT3A [Search on ENCODE]
GSM2277153 LNCaP Epithelium Prostate HNF4G [Search on ENCODE]
GSM2277150 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2480814 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537229 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537225 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537226 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537227 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM788367 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM2537216 22RV1 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM818282 RKO Epithelium Colon KAT7 [Search on ENCODE]
GSM2857242 H1975 None Lung ZEB1 [Search on ENCODE]
GSM889410 LS174T Epithelium Colon POLR2A [Search on ENCODE]
GSM2350452 C4-2 None Prostate BRD4 [Search on ENCODE]
GSM2877993 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM2797129 None None Breast FOXA1 [Search on ENCODE]
GSM2277161 22RV1 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2360622 MDA-231 Epithelium Mammary Gland ZEB1 [Search on ENCODE]
GSM831026 H1 Embryonic Stem Cell Embryo CHD1 [Search on ENCODE]
GSM2741769 C4-2B Epithelium Prostate ZFX [Search on ENCODE]
GSM2537230 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.